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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.21

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2025-03-31, 22:50 BST based on data in: /Users/goldriev/pkgs/vsgseq2/work/f7/db45655c8677e8e7548a2fde7c7006


        General Statistics

        Showing 128/128 rows and 4/5 columns.
        Sample Name% AlignedM AlignedCFRM Bias
        900_10_1
        71.9%
        12.8M
        100.0%
        0.5
        900_13_1
        27.1%
        7.3M
        100.0%
        0.5
        900_14_1
        29.6%
        6.1M
        100.0%
        0.5
        900_17_1
        0.0%
        0.0M
        100.0%
        0.5
        900_20_1
        4.0%
        1.1M
        100.0%
        0.5
        900_21_1
        3.2%
        0.7M
        100.0%
        0.5
        900_24_1
        13.5%
        3.3M
        100.0%
        0.5
        900_26_1
        18.2%
        3.7M
        100.0%
        0.5
        900_28_1
        30.4%
        6.1M
        100.0%
        0.5
        900_31_1
        39.9%
        6.4M
        100.0%
        0.5
        900_42_1
        3.7%
        0.8M
        100.0%
        0.5
        900_54_1
        7.9%
        1.6M
        100.0%
        0.5
        900_d33_1
        5.0%
        1.5M
        100.0%
        0.5
        900_d47_1
        5.6%
        1.3M
        100.0%
        0.5
        900_d4_1
        24.2%
        8.9M
        100.0%
        0.5
        900_d70_1
        0.0%
        0.0M
        100.0%
        0.5
        908_10_1
        63.8%
        12.2M
        100.0%
        0.5
        908_20_1
        11.6%
        3.5M
        100.0%
        0.5
        908_24_1
        2.2%
        0.7M
        100.0%
        0.5
        908_26_1
        12.3%
        3.1M
        100.0%
        0.5
        908_28_1
        10.8%
        2.6M
        100.0%
        0.5
        908_31_1
        1.4%
        0.4M
        100.0%
        0.5
        908_35_1
        1.0%
        0.2M
        100.0%
        0.5
        908_38_1
        0.1%
        0.0M
        100.0%
        0.5
        908_40_1
        1.5%
        0.4M
        100.0%
        0.5
        908_42_1
        11.8%
        3.1M
        100.0%
        0.5
        908_52_1
        4.3%
        1.3M
        100.0%
        0.5
        908_5_1
        21.9%
        5.0M
        100.0%
        0.5
        908_61_1
        1.3%
        0.3M
        100.0%
        0.5
        908_6_1
        14.4%
        3.4M
        100.0%
        0.5
        908_d11_1
        1.3%
        0.4M
        100.0%
        0.5
        908_d45_1
        22.3%
        6.9M
        100.0%
        0.5
        908_d4_1
        40.0%
        7.8M
        100.0%
        0.5
        908_d70_1
        0.2%
        0.0M
        100.0%
        0.5
        914_13_1
        52.4%
        14.8M
        100.0%
        0.5
        914_14_1
        44.2%
        12.0M
        100.0%
        0.5
        914_20_1
        40.4%
        10.3M
        100.0%
        0.5
        914_24_1
        29.1%
        7.2M
        100.0%
        0.5
        914_26_1
        43.3%
        11.8M
        100.0%
        0.5
        914_28_1
        30.9%
        7.8M
        100.0%
        0.5
        914_31_1
        21.4%
        5.4M
        100.0%
        0.5
        914_33_1
        32.5%
        7.6M
        100.0%
        0.5
        914_35_1
        19.6%
        5.5M
        100.0%
        0.5
        914_42_1
        8.6%
        2.4M
        100.0%
        0.5
        914_52_1
        37.6%
        9.7M
        100.0%
        0.5
        914_5_1
        14.6%
        3.6M
        100.0%
        0.5
        914_61_1
        1.2%
        0.3M
        100.0%
        0.5
        914_6_1
        22.9%
        6.1M
        100.0%
        0.5
        914_d17_1
        23.4%
        7.3M
        100.0%
        0.5
        914_d45_1
        11.7%
        3.2M
        100.0%
        0.5
        914_d4_1
        4.1%
        0.9M
        100.0%
        0.5
        914_d68_1
        1.4%
        0.4M
        100.0%
        0.5
        924_10_1
        56.3%
        18.9M
        100.0%
        0.5
        924_17_1
        7.3%
        2.1M
        100.0%
        0.5
        924_18_1
        5.6%
        1.9M
        100.0%
        0.5
        924_19_1
        36.4%
        9.3M
        100.0%
        0.5
        924_20_1
        40.0%
        11.6M
        100.0%
        0.5
        924_24_1
        50.7%
        13.8M
        100.0%
        0.5
        924_26_1
        25.1%
        7.5M
        100.0%
        0.5
        924_28_1
        25.5%
        6.8M
        100.0%
        0.5
        924_31_1
        28.1%
        6.7M
        100.0%
        0.5
        924_33_1
        7.3%
        2.4M
        100.0%
        0.5
        924_35_1
        5.3%
        1.5M
        100.0%
        0.5
        924_38_1
        11.7%
        2.7M
        100.0%
        0.5
        924_40_1
        15.0%
        4.2M
        100.0%
        0.5
        924_52_1
        12.0%
        3.1M
        100.0%
        0.5
        924_54_1
        1.3%
        0.4M
        100.0%
        0.5
        924_d11_1
        1.4%
        0.5M
        100.0%
        0.5
        924_d45_1
        1.9%
        0.5M
        100.0%
        0.5
        924_d4_1
        10.9%
        3.0M
        100.0%
        0.5
        924_d66_1
        0.1%
        0.0M
        100.0%
        0.5
        929_10_1
        55.5%
        16.8M
        100.0%
        0.5
        929_13_1
        49.7%
        17.8M
        100.0%
        0.5
        929_20_1
        1.6%
        0.5M
        100.0%
        0.5
        929_21_1
        1.5%
        0.4M
        100.0%
        0.5
        929_24_1
        3.7%
        0.9M
        100.0%
        0.5
        929_26_1
        0.5%
        0.2M
        100.0%
        0.5
        929_31_1
        1.2%
        0.3M
        100.0%
        0.5
        929_52_1
        2.4%
        0.9M
        100.0%
        0.5
        929_d33_1
        0.9%
        0.2M
        100.0%
        0.5
        929_d45_1
        4.2%
        1.2M
        100.0%
        0.5
        929_d4_1
        12.7%
        3.1M
        100.0%
        0.5
        929_d66_1
        0.0%
        0.0M
        100.0%
        0.5
        B1_1_1
        63.6%
        6.6M
        100.0%
        0.5
        B1_2_1
        18.5%
        1.7M
        100.0%
        0.5
        B1_3_1
        82.6%
        7.1M
        100.0%
        0.5
        B1_4_1
        8.4%
        0.7M
        100.0%
        0.5
        B1_5_1
        67.5%
        4.5M
        100.0%
        0.5
        B1_6_1
        47.9%
        2.9M
        100.0%
        0.5
        B1_7_1
        65.7%
        6.4M
        100.0%
        0.4
        B1_8_1
        3.7%
        0.2M
        100.0%
        0.5
        B1_9_1
        63.2%
        7.9M
        100.0%
        0.5
        R1_1_1
        34.7%
        5.9M
        100.0%
        0.4
        R1_3_1
        57.2%
        9.0M
        100.0%
        0.5
        R1_4REP_1
        2.3%
        0.3M
        100.0%
        0.5
        R1_4_1
        14.7%
        5.1M
        100.0%
        0.5
        R1_5REP_1
        7.0%
        0.5M
        100.0%
        0.5
        R1_5_1
        12.1%
        0.8M
        100.0%
        0.5
        R1_6_1
        61.4%
        3.8M
        100.0%
        0.4
        R1_7_1
        40.9%
        3.3M
        100.0%
        0.5
        R1_9_1
        5.8%
        0.5M
        100.0%
        0.5
        R2_1_1
        46.9%
        3.9M
        100.0%
        0.5
        R2_2REP_1
        2.8%
        0.4M
        100.0%
        0.5
        R2_2_1
        4.3%
        0.5M
        100.0%
        0.4
        R2_3REP_1
        32.3%
        5.0M
        100.0%
        0.6
        R2_3_1
        29.7%
        2.4M
        100.0%
        0.5
        R2_4_1
        44.6%
        4.8M
        100.0%
        0.5
        R2_5_1
        27.0%
        3.6M
        100.0%
        0.5
        R2_6_1
        5.9%
        0.3M
        100.0%
        0.5
        R2_7_1
        25.8%
        1.5M
        100.0%
        0.5
        R2_8_1
        59.8%
        6.3M
        100.0%
        0.5
        R2_9_1
        17.6%
        1.0M
        100.0%
        0.5
        WT_E1_1
        35.1%
        5.8M
        100.0%
        0.5
        WT_E2_1
        55.7%
        11.4M
        100.0%
        0.5
        WT_E3_1
        33.3%
        6.6M
        100.0%
        0.5
        WT_E4_1
        13.7%
        3.0M
        100.0%
        0.5
        WT_E5_1
        23.8%
        3.8M
        100.0%
        0.5
        WT_E6_1
        38.6%
        8.8M
        100.0%
        0.5
        WT_E7_1
        29.7%
        6.0M
        100.0%
        0.5
        WT_E8_1
        26.4%
        4.7M
        100.0%
        0.5
        WT_L1_1
        19.8%
        3.1M
        100.0%
        0.5
        WT_L2_1
        7.0%
        1.4M
        100.0%
        0.5
        WT_L3_1
        44.4%
        9.1M
        100.0%
        0.5
        WT_L4_1
        2.4%
        0.4M
        100.0%
        0.5
        WT_L5_1
        6.0%
        1.3M
        100.0%
        0.5
        WT_L6_1
        14.6%
        2.5M
        100.0%
        0.5
        WT_L7_1
        25.3%
        4.8M
        100.0%
        0.5
        WT_L8_1
        8.4%
        1.9M
        100.0%
        0.5

        Salmon

        Version: 1.10.2

        Salmon is a tool for quantifying the expression of transcripts using RNA-seq data.DOI: 10.1038/nmeth.4197.

        Created with MultiQC

        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        SoftwareVersion
        Salmon1.10.2