A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.
Report
generated on 2025-03-31, 22:50 BST
based on data in:
/Users/goldriev/pkgs/vsgseq2/work/f7/db45655c8677e8e7548a2fde7c7006
General Statistics
| Sample Name | % Aligned | M Aligned | CFR | M Bias |
|---|---|---|---|---|
| 900_10_1 | 71.9% | 12.8M | 100.0% | 0.5 |
| 900_13_1 | 27.1% | 7.3M | 100.0% | 0.5 |
| 900_14_1 | 29.6% | 6.1M | 100.0% | 0.5 |
| 900_17_1 | 0.0% | 0.0M | 100.0% | 0.5 |
| 900_20_1 | 4.0% | 1.1M | 100.0% | 0.5 |
| 900_21_1 | 3.2% | 0.7M | 100.0% | 0.5 |
| 900_24_1 | 13.5% | 3.3M | 100.0% | 0.5 |
| 900_26_1 | 18.2% | 3.7M | 100.0% | 0.5 |
| 900_28_1 | 30.4% | 6.1M | 100.0% | 0.5 |
| 900_31_1 | 39.9% | 6.4M | 100.0% | 0.5 |
| 900_42_1 | 3.7% | 0.8M | 100.0% | 0.5 |
| 900_54_1 | 7.9% | 1.6M | 100.0% | 0.5 |
| 900_d33_1 | 5.0% | 1.5M | 100.0% | 0.5 |
| 900_d47_1 | 5.6% | 1.3M | 100.0% | 0.5 |
| 900_d4_1 | 24.2% | 8.9M | 100.0% | 0.5 |
| 900_d70_1 | 0.0% | 0.0M | 100.0% | 0.5 |
| 908_10_1 | 63.8% | 12.2M | 100.0% | 0.5 |
| 908_20_1 | 11.6% | 3.5M | 100.0% | 0.5 |
| 908_24_1 | 2.2% | 0.7M | 100.0% | 0.5 |
| 908_26_1 | 12.3% | 3.1M | 100.0% | 0.5 |
| 908_28_1 | 10.8% | 2.6M | 100.0% | 0.5 |
| 908_31_1 | 1.4% | 0.4M | 100.0% | 0.5 |
| 908_35_1 | 1.0% | 0.2M | 100.0% | 0.5 |
| 908_38_1 | 0.1% | 0.0M | 100.0% | 0.5 |
| 908_40_1 | 1.5% | 0.4M | 100.0% | 0.5 |
| 908_42_1 | 11.8% | 3.1M | 100.0% | 0.5 |
| 908_52_1 | 4.3% | 1.3M | 100.0% | 0.5 |
| 908_5_1 | 21.9% | 5.0M | 100.0% | 0.5 |
| 908_61_1 | 1.3% | 0.3M | 100.0% | 0.5 |
| 908_6_1 | 14.4% | 3.4M | 100.0% | 0.5 |
| 908_d11_1 | 1.3% | 0.4M | 100.0% | 0.5 |
| 908_d45_1 | 22.3% | 6.9M | 100.0% | 0.5 |
| 908_d4_1 | 40.0% | 7.8M | 100.0% | 0.5 |
| 908_d70_1 | 0.2% | 0.0M | 100.0% | 0.5 |
| 914_13_1 | 52.4% | 14.8M | 100.0% | 0.5 |
| 914_14_1 | 44.2% | 12.0M | 100.0% | 0.5 |
| 914_20_1 | 40.4% | 10.3M | 100.0% | 0.5 |
| 914_24_1 | 29.1% | 7.2M | 100.0% | 0.5 |
| 914_26_1 | 43.3% | 11.8M | 100.0% | 0.5 |
| 914_28_1 | 30.9% | 7.8M | 100.0% | 0.5 |
| 914_31_1 | 21.4% | 5.4M | 100.0% | 0.5 |
| 914_33_1 | 32.5% | 7.6M | 100.0% | 0.5 |
| 914_35_1 | 19.6% | 5.5M | 100.0% | 0.5 |
| 914_42_1 | 8.6% | 2.4M | 100.0% | 0.5 |
| 914_52_1 | 37.6% | 9.7M | 100.0% | 0.5 |
| 914_5_1 | 14.6% | 3.6M | 100.0% | 0.5 |
| 914_61_1 | 1.2% | 0.3M | 100.0% | 0.5 |
| 914_6_1 | 22.9% | 6.1M | 100.0% | 0.5 |
| 914_d17_1 | 23.4% | 7.3M | 100.0% | 0.5 |
| 914_d45_1 | 11.7% | 3.2M | 100.0% | 0.5 |
| 914_d4_1 | 4.1% | 0.9M | 100.0% | 0.5 |
| 914_d68_1 | 1.4% | 0.4M | 100.0% | 0.5 |
| 924_10_1 | 56.3% | 18.9M | 100.0% | 0.5 |
| 924_17_1 | 7.3% | 2.1M | 100.0% | 0.5 |
| 924_18_1 | 5.6% | 1.9M | 100.0% | 0.5 |
| 924_19_1 | 36.4% | 9.3M | 100.0% | 0.5 |
| 924_20_1 | 40.0% | 11.6M | 100.0% | 0.5 |
| 924_24_1 | 50.7% | 13.8M | 100.0% | 0.5 |
| 924_26_1 | 25.1% | 7.5M | 100.0% | 0.5 |
| 924_28_1 | 25.5% | 6.8M | 100.0% | 0.5 |
| 924_31_1 | 28.1% | 6.7M | 100.0% | 0.5 |
| 924_33_1 | 7.3% | 2.4M | 100.0% | 0.5 |
| 924_35_1 | 5.3% | 1.5M | 100.0% | 0.5 |
| 924_38_1 | 11.7% | 2.7M | 100.0% | 0.5 |
| 924_40_1 | 15.0% | 4.2M | 100.0% | 0.5 |
| 924_52_1 | 12.0% | 3.1M | 100.0% | 0.5 |
| 924_54_1 | 1.3% | 0.4M | 100.0% | 0.5 |
| 924_d11_1 | 1.4% | 0.5M | 100.0% | 0.5 |
| 924_d45_1 | 1.9% | 0.5M | 100.0% | 0.5 |
| 924_d4_1 | 10.9% | 3.0M | 100.0% | 0.5 |
| 924_d66_1 | 0.1% | 0.0M | 100.0% | 0.5 |
| 929_10_1 | 55.5% | 16.8M | 100.0% | 0.5 |
| 929_13_1 | 49.7% | 17.8M | 100.0% | 0.5 |
| 929_20_1 | 1.6% | 0.5M | 100.0% | 0.5 |
| 929_21_1 | 1.5% | 0.4M | 100.0% | 0.5 |
| 929_24_1 | 3.7% | 0.9M | 100.0% | 0.5 |
| 929_26_1 | 0.5% | 0.2M | 100.0% | 0.5 |
| 929_31_1 | 1.2% | 0.3M | 100.0% | 0.5 |
| 929_52_1 | 2.4% | 0.9M | 100.0% | 0.5 |
| 929_d33_1 | 0.9% | 0.2M | 100.0% | 0.5 |
| 929_d45_1 | 4.2% | 1.2M | 100.0% | 0.5 |
| 929_d4_1 | 12.7% | 3.1M | 100.0% | 0.5 |
| 929_d66_1 | 0.0% | 0.0M | 100.0% | 0.5 |
| B1_1_1 | 63.6% | 6.6M | 100.0% | 0.5 |
| B1_2_1 | 18.5% | 1.7M | 100.0% | 0.5 |
| B1_3_1 | 82.6% | 7.1M | 100.0% | 0.5 |
| B1_4_1 | 8.4% | 0.7M | 100.0% | 0.5 |
| B1_5_1 | 67.5% | 4.5M | 100.0% | 0.5 |
| B1_6_1 | 47.9% | 2.9M | 100.0% | 0.5 |
| B1_7_1 | 65.7% | 6.4M | 100.0% | 0.4 |
| B1_8_1 | 3.7% | 0.2M | 100.0% | 0.5 |
| B1_9_1 | 63.2% | 7.9M | 100.0% | 0.5 |
| R1_1_1 | 34.7% | 5.9M | 100.0% | 0.4 |
| R1_3_1 | 57.2% | 9.0M | 100.0% | 0.5 |
| R1_4REP_1 | 2.3% | 0.3M | 100.0% | 0.5 |
| R1_4_1 | 14.7% | 5.1M | 100.0% | 0.5 |
| R1_5REP_1 | 7.0% | 0.5M | 100.0% | 0.5 |
| R1_5_1 | 12.1% | 0.8M | 100.0% | 0.5 |
| R1_6_1 | 61.4% | 3.8M | 100.0% | 0.4 |
| R1_7_1 | 40.9% | 3.3M | 100.0% | 0.5 |
| R1_9_1 | 5.8% | 0.5M | 100.0% | 0.5 |
| R2_1_1 | 46.9% | 3.9M | 100.0% | 0.5 |
| R2_2REP_1 | 2.8% | 0.4M | 100.0% | 0.5 |
| R2_2_1 | 4.3% | 0.5M | 100.0% | 0.4 |
| R2_3REP_1 | 32.3% | 5.0M | 100.0% | 0.6 |
| R2_3_1 | 29.7% | 2.4M | 100.0% | 0.5 |
| R2_4_1 | 44.6% | 4.8M | 100.0% | 0.5 |
| R2_5_1 | 27.0% | 3.6M | 100.0% | 0.5 |
| R2_6_1 | 5.9% | 0.3M | 100.0% | 0.5 |
| R2_7_1 | 25.8% | 1.5M | 100.0% | 0.5 |
| R2_8_1 | 59.8% | 6.3M | 100.0% | 0.5 |
| R2_9_1 | 17.6% | 1.0M | 100.0% | 0.5 |
| WT_E1_1 | 35.1% | 5.8M | 100.0% | 0.5 |
| WT_E2_1 | 55.7% | 11.4M | 100.0% | 0.5 |
| WT_E3_1 | 33.3% | 6.6M | 100.0% | 0.5 |
| WT_E4_1 | 13.7% | 3.0M | 100.0% | 0.5 |
| WT_E5_1 | 23.8% | 3.8M | 100.0% | 0.5 |
| WT_E6_1 | 38.6% | 8.8M | 100.0% | 0.5 |
| WT_E7_1 | 29.7% | 6.0M | 100.0% | 0.5 |
| WT_E8_1 | 26.4% | 4.7M | 100.0% | 0.5 |
| WT_L1_1 | 19.8% | 3.1M | 100.0% | 0.5 |
| WT_L2_1 | 7.0% | 1.4M | 100.0% | 0.5 |
| WT_L3_1 | 44.4% | 9.1M | 100.0% | 0.5 |
| WT_L4_1 | 2.4% | 0.4M | 100.0% | 0.5 |
| WT_L5_1 | 6.0% | 1.3M | 100.0% | 0.5 |
| WT_L6_1 | 14.6% | 2.5M | 100.0% | 0.5 |
| WT_L7_1 | 25.3% | 4.8M | 100.0% | 0.5 |
| WT_L8_1 | 8.4% | 1.9M | 100.0% | 0.5 |
Salmon
1.10.2
Salmon is a tool for quantifying the expression of transcripts using RNA-seq data.DOI: 10.1038/nmeth.4197.
Software Versions
Software Versions lists versions of software tools extracted from file contents.
| Software | Version |
|---|---|
| Salmon | 1.10.2 |