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MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

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About MultiQC

This report was generated using MultiQC, version 1.21

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MultiQC is published in Bioinformatics:

MultiQC: Summarize analysis results for multiple tools and samples in a single report
Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
Bioinformatics (2016)
doi: 10.1093/bioinformatics/btw354
PMID: 27312411

MultiQC is developed by:

A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

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Report generated on 2025-03-31, 22:50 BST based on data in: /Users/goldriev/pkgs/vsgseq2/work/f7/db45655c8677e8e7548a2fde7c7006

General Statistics

Showing ¹²⁸/₁₂₈ rows and ⁴/₅ columns.

Sample Name	% Aligned	M Aligned	Library types	CFR	M Bias
900_10_1	71.9%	12.8M	IU	100.0%	0.5
900_13_1	27.1%	7.3M	IU	100.0%	0.5
900_14_1	29.6%	6.1M	IU	100.0%	0.5
900_17_1	0.0%	0.0M	IU	100.0%	0.5
900_20_1	4.0%	1.1M	IU	100.0%	0.5
900_21_1	3.2%	0.7M	IU	100.0%	0.5
900_24_1	13.5%	3.3M	IU	100.0%	0.5
900_26_1	18.2%	3.7M	IU	100.0%	0.5
900_28_1	30.4%	6.1M	IU	100.0%	0.5
900_31_1	39.9%	6.4M	IU	100.0%	0.5
900_42_1	3.7%	0.8M	IU	100.0%	0.5
900_54_1	7.9%	1.6M	IU	100.0%	0.5
900_d33_1	5.0%	1.5M	IU	100.0%	0.5
900_d47_1	5.6%	1.3M	IU	100.0%	0.5
900_d4_1	24.2%	8.9M	IU	100.0%	0.5
900_d70_1	0.0%	0.0M	IU	100.0%	0.5
908_10_1	63.8%	12.2M	IU	100.0%	0.5
908_20_1	11.6%	3.5M	IU	100.0%	0.5
908_24_1	2.2%	0.7M	IU	100.0%	0.5
908_26_1	12.3%	3.1M	IU	100.0%	0.5
908_28_1	10.8%	2.6M	IU	100.0%	0.5
908_31_1	1.4%	0.4M	IU	100.0%	0.5
908_35_1	1.0%	0.2M	IU	100.0%	0.5
908_38_1	0.1%	0.0M	IU	100.0%	0.5
908_40_1	1.5%	0.4M	IU	100.0%	0.5
908_42_1	11.8%	3.1M	IU	100.0%	0.5
908_52_1	4.3%	1.3M	IU	100.0%	0.5
908_5_1	21.9%	5.0M	IU	100.0%	0.5
908_61_1	1.3%	0.3M	IU	100.0%	0.5
908_6_1	14.4%	3.4M	IU	100.0%	0.5
908_d11_1	1.3%	0.4M	IU	100.0%	0.5
908_d45_1	22.3%	6.9M	IU	100.0%	0.5
908_d4_1	40.0%	7.8M	IU	100.0%	0.5
908_d70_1	0.2%	0.0M	IU	100.0%	0.5
914_13_1	52.4%	14.8M	IU	100.0%	0.5
914_14_1	44.2%	12.0M	IU	100.0%	0.5
914_20_1	40.4%	10.3M	IU	100.0%	0.5
914_24_1	29.1%	7.2M	IU	100.0%	0.5
914_26_1	43.3%	11.8M	IU	100.0%	0.5
914_28_1	30.9%	7.8M	IU	100.0%	0.5
914_31_1	21.4%	5.4M	IU	100.0%	0.5
914_33_1	32.5%	7.6M	IU	100.0%	0.5
914_35_1	19.6%	5.5M	IU	100.0%	0.5
914_42_1	8.6%	2.4M	IU	100.0%	0.5
914_52_1	37.6%	9.7M	IU	100.0%	0.5
914_5_1	14.6%	3.6M	IU	100.0%	0.5
914_61_1	1.2%	0.3M	IU	100.0%	0.5
914_6_1	22.9%	6.1M	IU	100.0%	0.5
914_d17_1	23.4%	7.3M	IU	100.0%	0.5
914_d45_1	11.7%	3.2M	IU	100.0%	0.5
914_d4_1	4.1%	0.9M	IU	100.0%	0.5
914_d68_1	1.4%	0.4M	IU	100.0%	0.5
924_10_1	56.3%	18.9M	IU	100.0%	0.5
924_17_1	7.3%	2.1M	IU	100.0%	0.5
924_18_1	5.6%	1.9M	IU	100.0%	0.5
924_19_1	36.4%	9.3M	IU	100.0%	0.5
924_20_1	40.0%	11.6M	IU	100.0%	0.5
924_24_1	50.7%	13.8M	IU	100.0%	0.5
924_26_1	25.1%	7.5M	IU	100.0%	0.5
924_28_1	25.5%	6.8M	IU	100.0%	0.5
924_31_1	28.1%	6.7M	IU	100.0%	0.5
924_33_1	7.3%	2.4M	IU	100.0%	0.5
924_35_1	5.3%	1.5M	IU	100.0%	0.5
924_38_1	11.7%	2.7M	IU	100.0%	0.5
924_40_1	15.0%	4.2M	IU	100.0%	0.5
924_52_1	12.0%	3.1M	IU	100.0%	0.5
924_54_1	1.3%	0.4M	IU	100.0%	0.5
924_d11_1	1.4%	0.5M	IU	100.0%	0.5
924_d45_1	1.9%	0.5M	IU	100.0%	0.5
924_d4_1	10.9%	3.0M	IU	100.0%	0.5
924_d66_1	0.1%	0.0M	IU	100.0%	0.5
929_10_1	55.5%	16.8M	IU	100.0%	0.5
929_13_1	49.7%	17.8M	IU	100.0%	0.5
929_20_1	1.6%	0.5M	IU	100.0%	0.5
929_21_1	1.5%	0.4M	IU	100.0%	0.5
929_24_1	3.7%	0.9M	IU	100.0%	0.5
929_26_1	0.5%	0.2M	IU	100.0%	0.5
929_31_1	1.2%	0.3M	IU	100.0%	0.5
929_52_1	2.4%	0.9M	IU	100.0%	0.5
929_d33_1	0.9%	0.2M	IU	100.0%	0.5
929_d45_1	4.2%	1.2M	IU	100.0%	0.5
929_d4_1	12.7%	3.1M	IU	100.0%	0.5
929_d66_1	0.0%	0.0M	IU	100.0%	0.5
B1_1_1	63.6%	6.6M	IU	100.0%	0.5
B1_2_1	18.5%	1.7M	IU	100.0%	0.5
B1_3_1	82.6%	7.1M	IU	100.0%	0.5
B1_4_1	8.4%	0.7M	IU	100.0%	0.5
B1_5_1	67.5%	4.5M	IU	100.0%	0.5
B1_6_1	47.9%	2.9M	IU	100.0%	0.5
B1_7_1	65.7%	6.4M	IU	100.0%	0.4
B1_8_1	3.7%	0.2M	IU	100.0%	0.5
B1_9_1	63.2%	7.9M	IU	100.0%	0.5
R1_1_1	34.7%	5.9M	IU	100.0%	0.4
R1_3_1	57.2%	9.0M	IU	100.0%	0.5
R1_4REP_1	2.3%	0.3M	IU	100.0%	0.5
R1_4_1	14.7%	5.1M	IU	100.0%	0.5
R1_5REP_1	7.0%	0.5M	IU	100.0%	0.5
R1_5_1	12.1%	0.8M	IU	100.0%	0.5
R1_6_1	61.4%	3.8M	IU	100.0%	0.4
R1_7_1	40.9%	3.3M	IU	100.0%	0.5
R1_9_1	5.8%	0.5M	IU	100.0%	0.5
R2_1_1	46.9%	3.9M	IU	100.0%	0.5
R2_2REP_1	2.8%	0.4M	IU	100.0%	0.5
R2_2_1	4.3%	0.5M	IU	100.0%	0.4
R2_3REP_1	32.3%	5.0M	IU	100.0%	0.6
R2_3_1	29.7%	2.4M	IU	100.0%	0.5
R2_4_1	44.6%	4.8M	IU	100.0%	0.5
R2_5_1	27.0%	3.6M	IU	100.0%	0.5
R2_6_1	5.9%	0.3M	IU	100.0%	0.5
R2_7_1	25.8%	1.5M	IU	100.0%	0.5
R2_8_1	59.8%	6.3M	IU	100.0%	0.5
R2_9_1	17.6%	1.0M	IU	100.0%	0.5
WT_E1_1	35.1%	5.8M	IU	100.0%	0.5
WT_E2_1	55.7%	11.4M	IU	100.0%	0.5
WT_E3_1	33.3%	6.6M	IU	100.0%	0.5
WT_E4_1	13.7%	3.0M	IU	100.0%	0.5
WT_E5_1	23.8%	3.8M	IU	100.0%	0.5
WT_E6_1	38.6%	8.8M	IU	100.0%	0.5
WT_E7_1	29.7%	6.0M	IU	100.0%	0.5
WT_E8_1	26.4%	4.7M	IU	100.0%	0.5
WT_L1_1	19.8%	3.1M	IU	100.0%	0.5
WT_L2_1	7.0%	1.4M	IU	100.0%	0.5
WT_L3_1	44.4%	9.1M	IU	100.0%	0.5
WT_L4_1	2.4%	0.4M	IU	100.0%	0.5
WT_L5_1	6.0%	1.3M	IU	100.0%	0.5
WT_L6_1	14.6%	2.5M	IU	100.0%	0.5
WT_L7_1	25.3%	4.8M	IU	100.0%	0.5
WT_L8_1	8.4%	1.9M	IU	100.0%	0.5

Uncheck the tick box to hide columns. Click and drag the handle on the left to change order. Table ID: table-general_stats_table

Sort	Group	Column	Description	ID	Scale
\|\|	Salmon	% Aligned	% Mapped reads	`percent_mapped`	None
\|\|	Salmon	M Aligned	Mapped reads (millions)	`num_mapped`	read_count
\|\|	Salmon	Library types	Library types	`library_types`	None
\|\|	Salmon	CFR	Compatible fragment ratio	`compatible_fragment_ratio`	None
\|\|	Salmon	M Bias	Strand mapping bias	`strand_mapping_bias`	None

Salmon

Version: 1.10.2

Salmon is a tool for quantifying the expression of transcripts using RNA-seq data.DOI: 10.1038/nmeth.4197.

Created with MultiQC

Software Versions

Software Versions lists versions of software tools extracted from file contents.

Software	Version
Salmon	`1.10.2`

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Salmon

Software Versions

v1.21

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